Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs8078651 chr17:47409222 T/C 4.2E-6 175 25.77 23.03 15 KM Plot
PCPG rs8079884 chr17:80517675 T/C 4.21E-5 178 25.97 19.72 7.2 KM Plot
PCPG rs8083001 chr18:72165058 A/G 0.000318 178 24.62 30.63 6.17 KM Plot
PCPG rs8097180 chr18:44147853 C/T 1.86E-5 178 25.4 25.53 11.78 KM Plot
PCPG rs8099944 chr19:19716054 G/A 0.000439 174 24.93 27.75 20.25 KM Plot
PCPG rs8104594 chr19:48087974 T/C 0.000124 170 25.35 24.53 25.87 KM Plot
PCPG rs8109130 chr19:19668738 A/G 0.000465 178 25.67 27.2 20.25 KM Plot
PCPG rs8110266 chr19:19723883 C/T 0.000377 173 25.17 26.88 20.25 KM Plot
PCPG rs8113107 chr19:19669507 G/T 0.000314 178 25.77 26.05 23.48 KM Plot
PCPG rs8127206 chr21:38442208 T/C 4.52E-6 178 25 26.57 3.7 KM Plot
PCPG rs8132580 chr21:38452027 T/A 9.52E-9 176 25.17 25.4 3.83 KM Plot
PCPG rs8140283 chr22:21290360 A/G 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs8180054 chr3:80553618 C/G 0.000164 178 26.43 24.53 19.87 KM Plot
PCPG rs8180743 chr7:90850220 A/T 2.81E-6 177 25.17 25.87 24.7 KM Plot
PCPG rs823692 chr6:7490617 A/C 0.000193 178 15.82 42.87 24.85 KM Plot